IL_3JAQ_073

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_073 not in the Motif Atlas

Homologous match to IL_8CRE_467

Geometric discrepancy: 0.1659

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

3JAQ|1|2|G|1636
3JAQ|1|2|C|1637
3JAQ|1|2|C|1638
3JAQ|1|2|C|1639
*
3JAQ|1|2|G|1758
3JAQ|1|2|U|1759
3JAQ|1|2|A|1760
3JAQ|1|2|A|1761
3JAQ|1|2|C|1762

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

mRNA

Chain h

eL41

Chain m

eIF1