IL_3JAQ_074

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_074 not in the Motif Atlas

Geometric match to IL_3GM7_004

Geometric discrepancy: 0.1764

The information below is about IL_3GM7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3JAQ|1|2|G|1640
3JAQ|1|2|U|1641
3JAQ|1|2|C|1642
*
3JAQ|1|2|G|1755
3JAQ|1|2|U|1756
3JAQ|1|2|C|1757

Current chains

Chain 2

18S rRNA

Nearby chains

Chain h

eL41

Chain i

eIF1A

Chain m

eIF1