IL_3JCD_001

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_001 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.135

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3JCD|1|A|G|24
3JCD|1|A|U|25
3JCD|1|A|G|26
3JCD|1|A|G|27
3JCD|1|A|A|28
3JCD|1|A|U|29
3JCD|1|A|G|30
*
3JCD|1|A|C|510
3JCD|1|A|U|511
3JCD|1|A|G|512
3JCD|1|A|A|513
3JCD|1|A|A|514
3JCD|1|A|A|515
3JCD|1|A|C|516

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22