IL_3JCD_008

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_008 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3523

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

3JCD|1|A|C|274
3JCD|1|A|C|275
3JCD|1|A|U|276
3JCD|1|A|G|277
3JCD|1|A|A|278
3JCD|1|A|A|279
3JCD|1|A|U|280
3JCD|1|A|C|281
*
3JCD|1|A|G|359
3JCD|1|A|U|360
3JCD|1|A|G|361
3JCD|1|A|A|362
3JCD|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains