IL_3JCD_066

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

3JCD|1|A|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_066 not in the Motif Atlas

Homologous match to IL_7A0S_064

Geometric discrepancy: 0.1103

The information below is about IL_7A0S_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

3JCD|1|A|G|1770
3JCD|1|A|C|1771
*
3JCD|1|A|G|1980
3JCD|1|A|A|1981
3JCD|1|A|U|1982

Current chains

Chain A

23S ribosomal RNA

Nearby chains