3D structure

PDB id
3JCD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
3JCD|1|A|A|2602
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCD_095 not in the Motif Atlas
Homologous match to IL_5J7L_344
Geometric discrepancy: 0.3147
The information below is about IL_5J7L_344
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

3JCD|1|A|C|2591
3JCD|1|A|G|2592
*
3JCD|1|A|C|2601
3JCD|1|A|A|2602
3JCD|1|A|G|2603

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 8
Transfer RNA; tRNA
Chain C
50S ribosomal protein L2
Chain x
Elongation factor 4

Coloring options:


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