IL_3JCD_158

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_158 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.3754

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3JCD|1|a|C|1259
3JCD|1|a|G|1260
3JCD|1|a|A|1261
3JCD|1|a|C|1262
3JCD|1|a|C|1263
*
3JCD|1|a|G|1272
3JCD|1|a|C|1273
3JCD|1|a|A|1274
3JCD|1|a|A|1275
3JCD|1|a|G|1276

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14