IL_3JCD_163

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

3JCD|1|a|A|1492, 3JCD|1|a|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_163 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.3156

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

3JCD|1|a|C|1407
3JCD|1|a|A|1408
3JCD|1|a|C|1409
*
3JCD|1|a|G|1491
3JCD|1|a|A|1492
3JCD|1|a|A|1493
3JCD|1|a|G|1494

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 7

mRNA

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain l

30S ribosomal protein S12