IL_3JCD_169

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

3JCD|1|A|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_169 not in the Motif Atlas

Geometric match to IL_7Y2B_003

Geometric discrepancy: 0.2509

The information below is about IL_7Y2B_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

3JCD|1|A|G|35
3JCD|1|A|G|36
3JCD|1|A|C|37
*
3JCD|1|A|G|442
3JCD|1|A|A|443
3JCD|1|A|C|444
3JCD|1|A|C|445

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20