IL_3JCD_179

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAA*UACUC

Length

8 nucleotides

Bulged bases

3JCD|1|A|A|2439, 3JCD|1|A|C|2440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_179 not in the Motif Atlas

Homologous match to IL_5J7L_323

Geometric discrepancy: 0.4107

The information below is about IL_5J7L_323

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCD|1|A|G|2069
3JCD|1|A|A|2070
3JCD|1|A|A|2071
*
3JCD|1|A|U|2438
3JCD|1|A|A|2439
3JCD|1|A|C|2440
3JCD|1|A|U|2441
3JCD|1|A|C|2442

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain C

50S ribosomal protein L2

Chain E

50S ribosomal protein L4