IL_3JCD_184

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAC*GCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_184 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.2938

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46387.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

3JCD|1|a|G|202
3JCD|1|a|G|203
3JCD|1|a|G|204
3JCD|1|a|A|205
3JCD|1|a|C|206
*
3JCD|1|a|G|213
3JCD|1|a|C|214
3JCD|1|a|C|215

Current chains

Chain a

16S ribosomal RNA

Nearby chains