3D structure

PDB id
3JCD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GG*UGACC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCD_186 not in the Motif Atlas
Homologous match to IL_4LFB_013
Geometric discrepancy: 0.1831
The information below is about IL_4LFB_013
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

3JCD|1|a|G|292
3JCD|1|a|G|293
*
3JCD|1|a|U|304
3JCD|1|a|G|305
3JCD|1|a|A|306
3JCD|1|a|C|307
3JCD|1|a|C|308

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain p
30S ribosomal protein S16

Coloring options:


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