IL_3JCD_188
3D structure
- PDB id
- 3JCD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAAAUCCC*GGAACUGC
- Length
- 18 nucleotides
- Bulged bases
- 3JCD|1|a|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCD_188 not in the Motif Atlas
- Homologous match to IL_6CZR_138
- Geometric discrepancy: 0.4448
- The information below is about IL_6CZR_138
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_57273.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JCD|1|a|G|604
3JCD|1|a|U|605
3JCD|1|a|G|606
3JCD|1|a|A|607
3JCD|1|a|A|608
3JCD|1|a|A|609
3JCD|1|a|U|610
3JCD|1|a|C|611
3JCD|1|a|C|612
3JCD|1|a|C|613
*
3JCD|1|a|G|627
3JCD|1|a|G|628
3JCD|1|a|A|629
3JCD|1|a|A|630
3JCD|1|a|C|631
3JCD|1|a|U|632
3JCD|1|a|G|633
3JCD|1|a|C|634
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain h
- 30S ribosomal protein S8
- Chain p
- 30S ribosomal protein S16
- Chain q
- 30S ribosomal protein S17
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