IL_3JCD_191

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGU*ACAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_191 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3465

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3JCD|1|a|G|953
3JCD|1|a|G|954
3JCD|1|a|U|955
*
3JCD|1|a|A|1225
3JCD|1|a|C|1226
3JCD|1|a|A|1227
3JCD|1|a|C|1228

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain m

30S ribosomal protein S13

Chain s

30S ribosomal protein S19