3D structure

PDB id
3JCT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CUGAUG*CGGAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCT_025 not in the Motif Atlas
Geometric match to IL_5TBW_026
Geometric discrepancy: 0.199
The information below is about IL_5TBW_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_82488.1
Basepair signature
cWW-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

3JCT|1|1|C|758
3JCT|1|1|U|759
3JCT|1|1|G|760
3JCT|1|1|A|761
3JCT|1|1|U|762
3JCT|1|1|G|763
*
3JCT|1|1|C|768
3JCT|1|1|G|769
3JCT|1|1|G|770
3JCT|1|1|A|771
3JCT|1|1|U|772
3JCT|1|1|G|773

Current chains

Chain 1
RDN25-1 rRNA

Nearby chains

Chain L
60S ribosomal protein L13-A
Chain a
60S ribosomal protein L28

Coloring options:


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