IL_3JCT_036

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGUAAAGCG*UUAAAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JCT|1|1|G|993
3JCT|1|1|G|994
3JCT|1|1|U|995
3JCT|1|1|A|996
3JCT|1|1|A|997
3JCT|1|1|A|998
3JCT|1|1|G|999
3JCT|1|1|C|1000
3JCT|1|1|G|1001
*
3JCT|1|1|U|1051
3JCT|1|1|U|1052
3JCT|1|1|A|1053
3JCT|1|1|A|1054
3JCT|1|1|A|1055
3JCT|1|1|U|1056

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain S

60S ribosomal protein L20-A

Chain T

60S ribosomal protein L21-A

Chain s

Nuclear GTP-binding protein NUG1