3D structure

PDB id
3JCT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
GG*CAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCT_071 not in the Motif Atlas
Homologous match to IL_8C3A_086
Geometric discrepancy: 0.1906
The information below is about IL_8C3A_086
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74125.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

3JCT|1|1|G|1947
3JCT|1|1|G|1948
*
3JCT|1|1|C|2098
3JCT|1|1|A|2099
3JCT|1|1|A|2100
3JCT|1|1|C|2101

Current chains

Chain 1
RDN25-1 rRNA

Nearby chains

Chain R
60S ribosomal protein L19-A

Coloring options:


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