IL_3JCT_083

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAG*UC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCT_083 not in the Motif Atlas

Geometric match to IL_4V84_420

Geometric discrepancy: 0.361

The information below is about IL_4V84_420

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_10569.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

3JCT|1|1|G|2528
3JCT|1|1|A|2529
3JCT|1|1|G|2530
*
3JCT|1|1|U|2581
3JCT|1|1|C|2582

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain q

Ribosome biogenesis protein NOP53