IL_3JCT_090
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UA*UAAG
- Length
- 6 nucleotides
- Bulged bases
- 3JCT|1|1|A|2911
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCT_090 not in the Motif Atlas
- Geometric match to IL_5TBW_111
- Geometric discrepancy: 0.1519
- The information below is about IL_5TBW_111
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_95601.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
3JCT|1|1|U|2891
3JCT|1|1|A|2892
*
3JCT|1|1|U|2909
3JCT|1|1|A|2910
3JCT|1|1|A|2911
3JCT|1|1|G|2912
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
- Chain z
- UPF0642 protein YBL028C
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