IL_3JCT_112

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCT_112 not in the Motif Atlas

Homologous match to IL_9AXU_122

Geometric discrepancy: 0.3766

The information below is about IL_9AXU_122

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

3JCT|1|1|G|3340
3JCT|1|1|U|3341
3JCT|1|1|A|3342
*
3JCT|1|1|U|3363
3JCT|1|1|C|3364

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain u

Ribosome biogenesis protein RLP24