IL_3JCT_133
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAG*UGAUC
- Length
- 41 nucleotides
- Bulged bases
- 3JCT|1|1|C|2539, 3JCT|1|1|A|2540, 3JCT|1|1|A|2547, 3JCT|1|1|C|2548, 3JCT|1|1|G|2549, 3JCT|1|1|U|2550, 3JCT|1|1|U|2551, 3JCT|1|1|C|2552, 3JCT|1|1|U|2553, 3JCT|1|1|A|2554, 3JCT|1|1|U|2558, 3JCT|1|1|U|2559, 3JCT|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCT|1|1|G|2528
3JCT|1|1|A|2529
3JCT|1|1|G|2530
3JCT|1|1|C|2531
3JCT|1|1|U|2532
3JCT|1|1|G|2533
3JCT|1|1|G|2534
3JCT|1|1|A|2535
3JCT|1|1|A|2536
3JCT|1|1|U|2537
3JCT|1|1|U|2538
3JCT|1|1|C|2539
3JCT|1|1|A|2540
3JCT|1|1|U|2541
3JCT|1|1|U|2542
3JCT|1|1|U|2543
3JCT|1|1|U|2544
3JCT|1|1|C|2545
3JCT|1|1|C|2546
3JCT|1|1|A|2547
3JCT|1|1|C|2548
3JCT|1|1|G|2549
3JCT|1|1|U|2550
3JCT|1|1|U|2551
3JCT|1|1|C|2552
3JCT|1|1|U|2553
3JCT|1|1|A|2554
3JCT|1|1|G|2555
3JCT|1|1|C|2556
3JCT|1|1|A|2557
3JCT|1|1|U|2558
3JCT|1|1|U|2559
3JCT|1|1|C|2560
3JCT|1|1|A|2561
3JCT|1|1|A|2562
3JCT|1|1|G|2563
*
3JCT|1|1|U|2578
3JCT|1|1|G|2579
3JCT|1|1|A|2580
3JCT|1|1|U|2581
3JCT|1|1|C|2582
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
- Chain q
- Ribosome biogenesis protein NOP53
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