IL_3JCT_139

3D structure

PDB id

3JCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

3JCT|1|1|U|252

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCT_139 not in the Motif Atlas

Homologous match to IL_8CRE_010

Geometric discrepancy: 0.5986

The information below is about IL_8CRE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70376.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

3JCT|1|1|U|169
3JCT|1|1|G|170
*
3JCT|1|1|U|248
3JCT|1|1|U|249
3JCT|1|1|U|250
3JCT|1|1|G|251
3JCT|1|1|U|252
3JCT|1|1|A|253

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain L

60S ribosomal protein L13-A

Chain h

60S ribosomal protein L35-A