3D structure

PDB id
3JCT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-em structure of eukaryotic pre-60S ribosomal subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
GG*UUUC
Length
6 nucleotides
Bulged bases
3JCT|1|1|U|1820, 3JCT|1|1|U|1821
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCT_144 not in the Motif Atlas
Homologous match to IL_8CRE_070
Geometric discrepancy: 0.1835
The information below is about IL_8CRE_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_82107.5
Basepair signature
cWW-cWW
Number of instances in this motif group
31

Unit IDs

3JCT|1|1|G|1623
3JCT|1|1|G|1624
*
3JCT|1|1|U|1819
3JCT|1|1|U|1820
3JCT|1|1|U|1821
3JCT|1|1|C|1822

Current chains

Chain 1
RDN25-1 rRNA

Nearby chains

Chain g
60S ribosomal protein L34-A
Chain k
60S ribosomal protein L38
Chain n
Pescadillo homolog

Coloring options:


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