IL_3JD5_004

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CAAGCAUCUACACCCCAGUG*CACACCCCACGGGAAACAG

Length

39 nucleotides

Bulged bases

3JD5|1|A|C|156, 3JD5|1|A|C|157, 3JD5|1|A|C|166

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JD5|1|A|C|51
3JD5|1|A|A|52
3JD5|1|A|A|53
3JD5|1|A|G|54
3JD5|1|A|C|55
3JD5|1|A|A|56
3JD5|1|A|U|57
3JD5|1|A|C|58
3JD5|1|A|U|59
3JD5|1|A|A|60
3JD5|1|A|C|61
3JD5|1|A|A|62
3JD5|1|A|C|63
3JD5|1|A|C|64
3JD5|1|A|C|65
3JD5|1|A|C|66
3JD5|1|A|A|67
3JD5|1|A|G|68
3JD5|1|A|U|69
3JD5|1|A|G|70
*
3JD5|1|A|C|150
3JD5|1|A|A|151
3JD5|1|A|C|152
3JD5|1|A|A|153
3JD5|1|A|C|154
3JD5|1|A|C|155
3JD5|1|A|C|156
3JD5|1|A|C|157
3JD5|1|A|A|158
3JD5|1|A|C|159
3JD5|1|A|G|160
3JD5|1|A|G|161
3JD5|1|A|G|162
3JD5|1|A|A|163
3JD5|1|A|A|164
3JD5|1|A|A|165
3JD5|1|A|C|166
3JD5|1|A|A|167
3JD5|1|A|G|168

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain P

28S ribosomal protein S16, mitochondrial

Chain d

28S ribosomal protein S26, mitochondrial

Chain j

28S ribosomal protein S34, mitochondrial

Chain p

28S ribosomal protein S18b, mitochondrial