IL_3JD5_007

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GCACA*UAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JD5|1|A|G|115
3JD5|1|A|C|116
3JD5|1|A|A|117
3JD5|1|A|C|118
3JD5|1|A|A|119
*
3JD5|1|A|U|127
3JD5|1|A|A|128
3JD5|1|A|G|129
3JD5|1|A|C|130

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain O

28S ribosomal protein S15, mitochondrial

Chain Q

28S ribosomal protein S17, mitochondrial

Chain j

28S ribosomal protein S34, mitochondrial

Chain n

Aurora kinase A interacting protein 1