IL_3JD5_008
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- UUAAG*CUAA
- Length
- 9 nucleotides
- Bulged bases
- 3JD5|1|A|U|182
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JD5_008 not in the Motif Atlas
- Geometric match to IL_4WF9_110
- Geometric discrepancy: 0.3494
- The information below is about IL_4WF9_110
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
3JD5|1|A|U|181
3JD5|1|A|U|182
3JD5|1|A|A|183
3JD5|1|A|A|184
3JD5|1|A|G|185
*
3JD5|1|A|C|204
3JD5|1|A|U|205
3JD5|1|A|A|206
3JD5|1|A|A|207
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain P
- 28S ribosomal protein S16, mitochondrial
- Chain c
- 28S ribosomal protein S25, mitochondrial
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