IL_3JD5_018

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UUC*GAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JD5_018 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3925

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

3JD5|1|A|U|553
3JD5|1|A|U|554
3JD5|1|A|C|555
*
3JD5|1|A|G|705
3JD5|1|A|A|706
3JD5|1|A|A|707
3JD5|1|A|A|708

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains