IL_3JD5_019

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GUCUAUAUACC*GGUGUAAC

Length

19 nucleotides

Bulged bases

3JD5|1|A|C|604, 3JD5|1|A|U|609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JD5|1|A|G|602
3JD5|1|A|U|603
3JD5|1|A|C|604
3JD5|1|A|U|605
3JD5|1|A|A|606
3JD5|1|A|U|607
3JD5|1|A|A|608
3JD5|1|A|U|609
3JD5|1|A|A|610
3JD5|1|A|C|611
3JD5|1|A|C|612
*
3JD5|1|A|G|683
3JD5|1|A|G|684
3JD5|1|A|U|685
3JD5|1|A|G|686
3JD5|1|A|U|687
3JD5|1|A|A|688
3JD5|1|A|A|689
3JD5|1|A|C|690

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain C

28S ribosomal protein S24, mitochondrial

Chain E

28S ribosomal protein S5, mitochondrial

Chain N

28S ribosomal protein S14, mitochondrial

Chain i

28S ribosomal protein S33, mitochondrial