IL_3JD5_023

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CAAAC*GUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JD5|1|A|C|624
3JD5|1|A|A|625
3JD5|1|A|A|626
3JD5|1|A|A|627
3JD5|1|A|C|628
*
3JD5|1|A|G|646
3JD5|1|A|U|647
3JD5|1|A|A|648
3JD5|1|A|A|649
3JD5|1|A|G|650

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain B

28S ribosomal protein S2, mitochondrial

Chain C

28S ribosomal protein S24, mitochondrial

Chain E

28S ribosomal protein S5, mitochondrial

Chain I

28S ribosomal protein S9, mitochondrial

Chain k

28S ribosomal protein S35, mitochondrial