IL_3JD5_026

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

3JD5|1|A|C|838, 3JD5|1|A|A|922

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JD5_026 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.411

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

3JD5|1|A|C|837
3JD5|1|A|C|838
3JD5|1|A|G|839
*
3JD5|1|A|C|920
3JD5|1|A|A|921
3JD5|1|A|A|922
3JD5|1|A|G|923

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain E

28S ribosomal protein S5, mitochondrial

Chain K

28S ribosomal protein S11, mitochondrial

Chain n

Aurora kinase A interacting protein 1