IL_3JD5_032
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- GCACCAUACCAAAU*ACAAUAGC
- Length
- 22 nucleotides
- Bulged bases
- 3JD5|1|A|C|304, 3JD5|1|A|U|307, 3JD5|1|A|A|308, 3JD5|1|A|C|310, 3JD5|1|A|A|312, 3JD5|1|A|A|386, 3JD5|1|A|U|387
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JD5|1|A|G|301
3JD5|1|A|C|302
3JD5|1|A|A|303
3JD5|1|A|C|304
3JD5|1|A|C|305
3JD5|1|A|A|306
3JD5|1|A|U|307
3JD5|1|A|A|308
3JD5|1|A|C|309
3JD5|1|A|C|310
3JD5|1|A|A|311
3JD5|1|A|A|312
3JD5|1|A|A|313
3JD5|1|A|U|314
*
3JD5|1|A|A|383
3JD5|1|A|C|384
3JD5|1|A|A|385
3JD5|1|A|A|386
3JD5|1|A|U|387
3JD5|1|A|A|388
3JD5|1|A|G|389
3JD5|1|A|C|390
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain F
- 28S ribosomal protein S6, mitochondrial
- Chain L
- 28S ribosomal protein S12, mitochondrial
- Chain O
- 28S ribosomal protein S15, mitochondrial
- Chain Q
- 28S ribosomal protein S17, mitochondrial
- Chain R
- 28S ribosomal protein S18c, mitochondrial
- Chain c
- 28S ribosomal protein S25, mitochondrial
- Chain m
- Coiled-coil-helix-coiled-coil-helix domain containing 1
Coloring options: