IL_3JD5_034

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GACCCAAACU*ACUAUGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JD5|1|A|G|408
3JD5|1|A|A|409
3JD5|1|A|C|410
3JD5|1|A|C|411
3JD5|1|A|C|412
3JD5|1|A|A|413
3JD5|1|A|A|414
3JD5|1|A|A|415
3JD5|1|A|C|416
3JD5|1|A|U|417
*
3JD5|1|A|A|433
3JD5|1|A|C|434
3JD5|1|A|U|435
3JD5|1|A|A|436
3JD5|1|A|U|437
3JD5|1|A|G|438
3JD5|1|A|C|439

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain K

28S ribosomal protein S11, mitochondrial

Chain U

28S ribosomal protein S21, mitochondrial

Chain n

Aurora kinase A interacting protein 1