IL_3JD5_040
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CAUCUUCAGCAAA*UAAGCGUAAUUAUGAUACAUAAAAACGUUAG
- Length
- 44 nucleotides
- Bulged bases
- 3JD5|1|A|G|660, 3JD5|1|A|A|676
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JD5|1|A|C|615
3JD5|1|A|A|616
3JD5|1|A|U|617
3JD5|1|A|C|618
3JD5|1|A|U|619
3JD5|1|A|U|620
3JD5|1|A|C|621
3JD5|1|A|A|622
3JD5|1|A|G|623
3JD5|1|A|C|624
3JD5|1|A|A|625
3JD5|1|A|A|626
3JD5|1|A|A|627
*
3JD5|1|A|U|647
3JD5|1|A|A|648
3JD5|1|A|A|649
3JD5|1|A|G|650
3JD5|1|A|C|651
3JD5|1|A|G|652
3JD5|1|A|U|653
3JD5|1|A|A|654
3JD5|1|A|A|655
3JD5|1|A|U|656
3JD5|1|A|U|657
3JD5|1|A|A|658
3JD5|1|A|U|659
3JD5|1|A|G|660
3JD5|1|A|A|661
3JD5|1|A|U|662
3JD5|1|A|A|663
3JD5|1|A|C|664
3JD5|1|A|A|665
3JD5|1|A|U|666
3JD5|1|A|A|667
3JD5|1|A|A|668
3JD5|1|A|A|669
3JD5|1|A|A|670
3JD5|1|A|A|671
3JD5|1|A|C|672
3JD5|1|A|G|673
3JD5|1|A|U|674
3JD5|1|A|U|675
3JD5|1|A|A|676
3JD5|1|A|G|677
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain B
- 28S ribosomal protein S2, mitochondrial
- Chain C
- 28S ribosomal protein S24, mitochondrial
- Chain E
- 28S ribosomal protein S5, mitochondrial
- Chain G
- 28S ribosomal protein S7, mitochondrial
- Chain I
- 28S ribosomal protein S9, mitochondrial
- Chain J
- 28S ribosomal protein S10, mitochondrial
- Chain N
- 28S ribosomal protein S14, mitochondrial
- Chain k
- 28S ribosomal protein S35, mitochondrial
Coloring options: