IL_3JD5_042

3D structure

PDB id

3JD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UCAAAUAGAUUCAG*CUAGCUACAUGAGA

Length

28 nucleotides

Bulged bases

3JD5|1|A|A|856, 3JD5|1|A|U|863, 3JD5|1|A|U|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JD5|1|A|U|853
3JD5|1|A|C|854
3JD5|1|A|A|855
3JD5|1|A|A|856
3JD5|1|A|A|857
3JD5|1|A|U|858
3JD5|1|A|A|859
3JD5|1|A|G|860
3JD5|1|A|A|861
3JD5|1|A|U|862
3JD5|1|A|U|863
3JD5|1|A|C|864
3JD5|1|A|A|865
3JD5|1|A|G|866
*
3JD5|1|A|C|891
3JD5|1|A|U|892
3JD5|1|A|A|893
3JD5|1|A|G|894
3JD5|1|A|C|895
3JD5|1|A|U|896
3JD5|1|A|A|897
3JD5|1|A|C|898
3JD5|1|A|A|899
3JD5|1|A|U|900
3JD5|1|A|G|901
3JD5|1|A|A|902
3JD5|1|A|G|903
3JD5|1|A|A|904

Current chains

Chain A

28S ribosomal RNA, mitochondial

Nearby chains

Chain O

28S ribosomal protein S15, mitochondrial

Chain j

28S ribosomal protein S34, mitochondrial

Chain n

Aurora kinase A interacting protein 1