IL_3JYV_015

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGAUAAAAAAUC*GAUGAUUCAU

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|A|213
3JYV|1|A|G|214
3JYV|1|A|A|215
3JYV|1|A|U|216
3JYV|1|A|A|217
3JYV|1|A|A|218
3JYV|1|A|A|219
3JYV|1|A|A|220
3JYV|1|A|A|221
3JYV|1|A|A|222
3JYV|1|A|U|223
3JYV|1|A|C|224
*
3JYV|1|A|G|243
3JYV|1|A|A|244
3JYV|1|A|U|245
3JYV|1|A|G|246
3JYV|1|A|A|247
3JYV|1|A|U|248
3JYV|1|A|U|249
3JYV|1|A|C|250
3JYV|1|A|A|251
3JYV|1|A|U|252

Current chains

Chain A

18S rRNA

Nearby chains

Chain Q

40S ribosomal protein S11