IL_3JYV_030

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGGCAAGUC*GCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|A|550
3JYV|1|A|G|551
3JYV|1|A|G|552
3JYV|1|A|C|554
3JYV|1|A|A|555
3JYV|1|A|A|556
3JYV|1|A|G|557
3JYV|1|A|U|558
3JYV|1|A|C|559
*
3JYV|1|A|G|586
3JYV|1|A|C|587
3JYV|1|A|U|588

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S3

Chain D

40S ribosomal protein S9(A)

Chain L

40S ribosomal protein S23(A)