IL_3JYV_034

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_034 not in the Motif Atlas

Geometric match to IL_5J7L_027

Geometric discrepancy: 0.1423

The information below is about IL_5J7L_027

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

3JYV|1|A|C|627
3JYV|1|A|G|628
3JYV|1|A|U|629
3JYV|1|A|A|630
3JYV|1|A|G|631
*
3JYV|1|A|U|967
3JYV|1|A|C|968
3JYV|1|A|A|969
3JYV|1|A|A|970
3JYV|1|A|G|971

Current chains

Chain A

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S13

Chain Q

40S ribosomal protein S11