IL_3JYV_046

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGUCGGGG*CAAGGAC

Length

15 nucleotides

Bulged bases

3JYV|1|A|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|G|871
3JYV|1|A|G|872
3JYV|1|A|U|873
3JYV|1|A|C|874
3JYV|1|A|G|875
3JYV|1|A|G|876
3JYV|1|A|G|877
3JYV|1|A|G|878
*
3JYV|1|A|C|949
3JYV|1|A|A|950
3JYV|1|A|A|951
3JYV|1|A|G|952
3JYV|1|A|G|953
3JYV|1|A|A|954
3JYV|1|A|C|955

Current chains

Chain A

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S13