IL_3JYV_050

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGGAUCGAAG*CGUAGUC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|G|984
3JYV|1|A|G|985
3JYV|1|A|G|986
3JYV|1|A|A|987
3JYV|1|A|U|988
3JYV|1|A|C|989
3JYV|1|A|G|990
3JYV|1|A|A|991
3JYV|1|A|A|992
3JYV|1|A|G|993
*
3JYV|1|A|C|1009
3JYV|1|A|G|1010
3JYV|1|A|U|1011
3JYV|1|A|A|1012
3JYV|1|A|G|1013
3JYV|1|A|U|1014
3JYV|1|A|C|1015

Current chains

Chain A

18S rRNA

Nearby chains

Chain K

40S ribosomal protein S14(A)

Chain O

40S ribosomal protein S13