IL_3JYV_058

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_058 not in the Motif Atlas

Geometric match to IL_4X4N_005

Geometric discrepancy: 0.1233

The information below is about IL_4X4N_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3JYV|1|A|C|1170
3JYV|1|A|C|1171
3JYV|1|A|U|1172
*
3JYV|1|A|G|1462
3JYV|1|A|C|1463
3JYV|1|A|G|1464

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain M

40S ribosomal protein S18