IL_3JYV_067

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

3JYV|1|A|A|1424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_067 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.2478

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

3JYV|1|A|C|1276
3JYV|1|A|G|1277
*
3JYV|1|A|C|1423
3JYV|1|A|A|1424
3JYV|1|A|G|1425

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S3

Chain J

40S ribosomal protein S20

Chain N

40S ribosomal protein S29(A)