IL_3JYV_069

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UACUAAAUA*UUCUUAGA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|U|1337
3JYV|1|A|A|1338
3JYV|1|A|C|1339
3JYV|1|A|U|1340
3JYV|1|A|A|1341
3JYV|1|A|A|1342
3JYV|1|A|A|1343
3JYV|1|A|U|1344
3JYV|1|A|A|1345
*
3JYV|1|A|U|1374
3JYV|1|A|U|1375
3JYV|1|A|C|1376
3JYV|1|A|U|1377
3JYV|1|A|U|1378
3JYV|1|A|A|1379
3JYV|1|A|G|1380
3JYV|1|A|A|1381

Current chains

Chain A

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S16(A)

Chain J

40S ribosomal protein S20

Chain R

RACK1 protein