IL_3JYV_075

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_075 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.2825

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

3JYV|1|A|G|1538
3JYV|1|A|G|1539
3JYV|1|A|G|1540
3JYV|1|A|A|1541
3JYV|1|A|U|1542
3JYV|1|A|A|1543
*
3JYV|1|A|U|1564
3JYV|1|A|U|1565
3JYV|1|A|C|1566
3JYV|1|A|A|1567
3JYV|1|A|A|1568
3JYV|1|A|C|1569

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S18

Chain T

s19e protein