IL_3JYV_077

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_077 not in the Motif Atlas

Geometric match to IL_2O3V_002

Geometric discrepancy: 0.3374

The information below is about IL_2O3V_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

3JYV|1|A|C|1642
3JYV|1|A|G|1643
3JYV|1|A|C|1644
3JYV|1|A|U|1645
*
3JYV|1|A|A|1751
3JYV|1|A|A|1752
3JYV|1|A|A|1753
3JYV|1|A|A|1754
3JYV|1|A|G|1755

Current chains

Chain A

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S23(A)