IL_3JYV_092

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

3JYV|1|A|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JYV_092 not in the Motif Atlas

Geometric match to IL_8CRE_019

Geometric discrepancy: 0.3913

The information below is about IL_8CRE_019

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

3JYV|1|A|A|481
3JYV|1|A|U|482
*
3JYV|1|A|A|505
3JYV|1|A|A|506
3JYV|1|A|U|507

Current chains

Chain A

18S rRNA

Nearby chains