IL_3JYV_094

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGGUUGGC*GAUUUCCAACGG

Length

20 nucleotides

Bulged bases

3JYV|1|A|U|680

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|C|646
3JYV|1|A|G|647
3JYV|1|A|G|648
3JYV|1|A|U|649
3JYV|1|A|U|650
3JYV|1|A|G|651
3JYV|1|A|G|652
3JYV|1|A|C|653
*
3JYV|1|A|G|677
3JYV|1|A|A|678
3JYV|1|A|U|679
3JYV|1|A|U|680
3JYV|1|A|U|681
3JYV|1|A|C|682
3JYV|1|A|C|683
3JYV|1|A|A|684
3JYV|1|A|A|685
3JYV|1|A|C|686
3JYV|1|A|G|687
3JYV|1|A|G|688

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S22(A)

Chain Q

40S ribosomal protein S11