IL_3LOA_001

3D structure

PDB id

3LOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Analysis of the RNA construct with two adjacent ligand binding sites of helix h44 in 16S ribosomal RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_64231.3

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

3LOA|1|A|G|1401
3LOA|1|A|C|1402
3LOA|1|A|C|1403
3LOA|1|A|C|1404
*
3LOA|1|B|G|1497
3LOA|1|B|U|1498
3LOA|1|B|A|1499
3LOA|1|B|A|1500
3LOA|1|B|C|1501

Current chains

Chain A

5'-R(*CP*CP*GP*CP*GP*CP*CP*CP*GP*(5BU)P*CP*AP*CP*AP*CP*CP*AP*CP*CP*CP*G)-3'

Chain B

5'-R(*GP*GP*GP*(5BU)P*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*UP*AP*AP*CP*GP*CP*GP*GP*C)-3'

Nearby chains