IL_3LWV_001
3D structure
- PDB id
- 3LWV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of H/ACA RNP bound to a substrate RNA containing 2'-deoxyuridine
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GAAACCGCG*UUCGCUCC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3LWV_001 not in the Motif Atlas
- Geometric match to IL_3HJW_001
- Geometric discrepancy: 0.2099
- The information below is about IL_3HJW_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16194.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
3LWV|1|D|G|9
3LWV|1|D|A|10
3LWV|1|D|A|11
3LWV|1|D|A|12
3LWV|1|D|C|13
3LWV|1|D|C|14
3LWV|1|D|G|15
3LWV|1|D|C|16
3LWV|1|D|G|17
*
3LWV|1|D|U|39
3LWV|1|D|U|40
3LWV|1|D|C|41
3LWV|1|D|G|42
3LWV|1|D|C|43
3LWV|1|D|U|44
3LWV|1|D|C|45
3LWV|1|D|C|46
Current chains
- Chain D
- H/ACA RNA
Nearby chains
- Chain A
- Pseudouridine synthase Cbf5
- Chain E
- 5'-R(*GP*AP*GP*CP*GP*(du)P*GP*CP*GP*GP*UP*UP*U)-3'
Coloring options: