IL_3MEI_001

3D structure

PDB id

3MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulatory motif from the thymidylate synthase mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.97 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases (A, C, G, U)

16U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.17

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3MEI|1|A|C|7
3MEI|1|A|G|8
*
3MEI|1|B|C|15
3MEI|1|B|U|16
3MEI|1|B|G|17

Current chains

Chain A

RNA (5'-R(*CP*CP*GP*CP*CP*GP*CP*GP*CP*CP*AP*(5BU)P*GP*CP*CP*UP*GP*UP*GP*GP*CP*GP*G)-3')

Chain B

RNA (5'-R(*CP*CP*GP*CP*CP*GP*CP*GP*CP*CP*AP*(5BU)P*GP*CP*CP*UP*GP*UP*GP*GP*CP*GP*G)-3')

Nearby chains