IL_3MJ3_001

3D structure

PDB id

3MJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to selenate

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUA*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3MJ3_001 not in the Motif Atlas

Geometric match to IL_4JGN_004

Geometric discrepancy: 0.1329

The information below is about IL_4JGN_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

3MJ3|1|B|U|6176
3MJ3|1|B|U|6177
3MJ3|1|B|A|6178
*
3MJ3|1|B|U|6198
3MJ3|1|B|G|6199
3MJ3|1|B|A|6200

Current chains

Chain B

Domain 3 of the cricket paralysis virus intergenic region IRES RNA

Nearby chains